TRepeT: Triticeae Repeatome Table
Species 1
*
Agropyron desertorum
Agropyron cristatum
Agropyron cristatum 4x
Agropyron fragile
Agropyron michnoi
Agropyron mongolicum
Dasypyrum breviaristatum
Dasypyrum breviaristatum 2x
Dasypyrum villosum
Elymus alashanicus
Elymus alaskanus
Elymus barystachyus
Elymus caninus
Elymus dahuricus
Elymus excelsus
Elymus hispanicus
Elymus longearistatus
Elymus nevskii
Elymus nutans
Elymus rectisetus
Elymus repens
Elymus scabrifolius
Elymus sibiricus
Elymus trachycaulus
Elymus xiningensis
Kengyilia grandiglumis
Kengyilia hirsuta
Kengyilia kokonorica
Kengyilia rigidula
Kengyilia thoroldiana
Pseudoroegneria libanotica
Pseudoroegneria marginata
Pseudoroegneria spicata
Pseudoroegneria stipifolia
Pseudoroegneria stipifolia 4x
Pseudoroegneria strigosa 4x
Roegneria breviglumis
Roegneria ciliaris
Roegneria grandis
Roegneria pendulina
Roegneria sinica
Roegneria sinica var. media
Roegneria stricta
Roegneria turczaninovii
Thinopyrum bessarabicum
Thinopyrum caespitosum
Thinopyrum elongatum
Thinopyrum elongatum 4x
Thinopyrum intermedium
Thinopyrum intermedium ssp. trichophorum
Thinopyrum ponticum
Thinopyrum scirpeum 4x
Species 2
*
Agropyron desertorum
Agropyron cristatum
Agropyron cristatum 4x
Agropyron fragile
Agropyron michnoi
Agropyron mongolicum
Dasypyrum breviaristatum
Dasypyrum breviaristatum 2x
Dasypyrum villosum
Elymus alashanicus
Elymus alaskanus
Elymus barystachyus
Elymus caninus
Elymus dahuricus
Elymus excelsus
Elymus hispanicus
Elymus longearistatus
Elymus nevskii
Elymus nutans
Elymus rectisetus
Elymus repens
Elymus scabrifolius
Elymus sibiricus
Elymus trachycaulus
Elymus xiningensis
Kengyilia grandiglumis
Kengyilia hirsuta
Kengyilia kokonorica
Kengyilia rigidula
Kengyilia thoroldiana
Pseudoroegneria libanotica
Pseudoroegneria marginata
Pseudoroegneria spicata
Pseudoroegneria stipifolia
Pseudoroegneria stipifolia 4x
Pseudoroegneria strigosa 4x
Roegneria breviglumis
Roegneria ciliaris
Roegneria grandis
Roegneria pendulina
Roegneria sinica
Roegneria sinica var. media
Roegneria stricta
Roegneria turczaninovii
Thinopyrum bessarabicum
Thinopyrum caespitosum
Thinopyrum elongatum
Thinopyrum elongatum 4x
Thinopyrum intermedium
Thinopyrum intermedium ssp. trichophorum
Thinopyrum ponticum
Thinopyrum scirpeum 4x
Species 3
*
Agropyron desertorum
Agropyron cristatum
Agropyron cristatum 4x
Agropyron fragile
Agropyron michnoi
Agropyron mongolicum
Dasypyrum breviaristatum
Dasypyrum breviaristatum 2x
Dasypyrum villosum
Elymus alashanicus
Elymus alaskanus
Elymus barystachyus
Elymus caninus
Elymus dahuricus
Elymus excelsus
Elymus hispanicus
Elymus longearistatus
Elymus nevskii
Elymus nutans
Elymus rectisetus
Elymus repens
Elymus scabrifolius
Elymus sibiricus
Elymus trachycaulus
Elymus xiningensis
Kengyilia grandiglumis
Kengyilia hirsuta
Kengyilia kokonorica
Kengyilia rigidula
Kengyilia thoroldiana
Pseudoroegneria libanotica
Pseudoroegneria marginata
Pseudoroegneria spicata
Pseudoroegneria stipifolia
Pseudoroegneria stipifolia 4x
Pseudoroegneria strigosa 4x
Roegneria breviglumis
Roegneria ciliaris
Roegneria grandis
Roegneria pendulina
Roegneria sinica
Roegneria sinica var. media
Roegneria stricta
Roegneria turczaninovii
Thinopyrum bessarabicum
Thinopyrum caespitosum
Thinopyrum elongatum
Thinopyrum elongatum 4x
Thinopyrum intermedium
Thinopyrum intermedium ssp. trichophorum
Thinopyrum ponticum
Thinopyrum scirpeum 4x
Class
*
18s rDNA
45S rDNA
45s rDNA
5S rDNA
A. cristatum
A. thaliana telomere repeat
Ae. crassa 4x
Ae. speltoides
Ae. tauschii
Afa family
C. bogdanii
cDNA CS by Danilova et al., 2017
cDNA CS by Danilova et al., 2018
cDNA CS by Danilova et al., 2019
cDNA CS by Danilova et al., 2020
cDNA CS by Danilova et al., 2021
cDNA CS by Danilova et al., 2022
cDNA CS by Danilova et al., 2023
cDNA CS by Danilova et al., 2024
cDNA CS by Danilova et al., 2025
cDNA CS by Danilova et al., 2026
cDNA CS by Danilova et al., 2027
cDNA CS by Danilova et al., 2028
cDNA CS by Danilova et al., 2029
cDNA CS by Danilova et al., 2030
cDNA CS by Danilova et al., 2031
cDNA CS by Danilova et al., 2032
cDNA CS by Danilova et al., 2033
cDNA CS by Danilova et al., 2034
cDNA CS by Danilova et al., 2035
cDNA CS by Danilova et al., 2036
cDNA CS by Danilova et al., 2037
cDNA CS by Danilova et al., 2038
cDNA CS by Danilova et al., 2039
cDNA H. vulgare
D. breviaristatum
D. villosum
E-genome-specific probe
E. trachycaulus
H. vulgare
microsatellite
multi-oligoprobe
P. huashanica
P. huashanica centromere-specific oligo-probe
P. libanotica
P. spicata
P. stipifolia
P. stipifolia and R. ciliaris
P. strigose
Ps. spicata
Ps. tauri
pSc119.2
Pseudorogneria libanotica
R. ciliaris
S. cereale
T. aestivum
T. aestivum centromeric retrotransposon
Th. bessarabicum
Th. elongatum
Th. intermedium
Th. intermedium ssp. trichophorum
Th. ponticum
Thinopyrum elongatum
Thinopyrum intermedium
Triticeae species
Unknown
wheat-barley
wheat-barley?
wheat–barley bulked oligo pools
Probe
*
(AAG)10
(CTT)12 by Song et al. (2020)
(GAA)10
(GAA)10+pSc119.2-1 oligos by Du et al. (2017)
(GAA)7
(GAA)9
1-E6HcII-1
1.4 kb family
17-202
17-251
17-62
19-202
1L-2
1S-2
2.3kb ClaI sub-clone of the 25S rDNA
2L-1
2L-3
2S-1
350-family repeat
396-bp repeat
3L-1
3L-2
3S-1
45S rDNA
45s rDNA
4I694
4L-2
4S-5
5L-2
5L-4
5S-1
5S-2
5S-4
5Sg oligo by Danilova et al. (2012)
6C6
6L-1
6L-3
6L-4
6L-5
6S-2
7EL-1
7EL-17
7EL-5
7L-1
7L-2
7L-3
7S-4
?
Abigail
ACRI_CL215
ACRI_CL78
ACRI_CL80
ACRI_CL85
Afa family
Afa family repeat
AFA-3 + AFA-4 + pAs1-1 + pAs1-3 + pAs1-4 + pAs1-6
AFA-3+AFA-4+pAs1-1+pAs1-3+pAs1-4+pAs1-6+pSc119.2-1
AFA-3, AFA-4, pAs1-1, pAs1-3, pAs1-4, pAs1-6, pSc119.2–1
Afa-family
BSCL1
BSCL135
BSCL135-1
BSCL135-2
BSCL156
BSCL158
BSCL184
BSCL242
BSCL242-1
BSCL5
BSCL75
cDNA
CentSt
Chr1
Chr2
Chr3
Chr4
Chr5
Chr6
Chr6E
Chr7
CL101
CL119
CL131
CL148
CL149
CL16
CL168
CL170
CL18
CL185
CL192
CL193
CL198
CL2
CL207
CL239
CL241
CL244
CL261
CL60
CL69
CL8
CL82
CL89
cP5S
CRW
DP4J20764
DP4J24903
DP4J27982
DP4J28086
DP4J30938
DP4J31304
DP4J33158
Fat
GAA
HS-ch-3
HS-CHTZ5
HS-TZ3
HS-TZ4
HT100.3 (TTTAGGG)n
oligo-(AAC)10
oligo-(AAG)10
oligo-(ACG)7
oligo-(ACT)10
oligo-(ACT)5
oligo-(AG)10
oligo-(CAA)7
oligo-(CAG)10
oligo-(CAT)10
oligo-(CATA)5
oligo-(CTT)5
oligo-(GAA)10
Oligo-(GAA)7
oligo-(GAA)7
oligo-(GAA)8
oligo-(GATA)5
oligo-(GT)7
oligo-(TAG)7
Oligo-13-J1011
Oligo-18SrDNA
oligo-1B2
oligo-1D1
oligo-1H-4-50
oligo-2YcL-163
oligo-3A1
Oligo-3A1
oligo-3B117.2
oligo-3D1
Oligo-44 by Tang et al. (2018)
oligo-45
oligo-5A1
oligo-5D151
oligo-5H-7-50
oligo-5S rDNA by Yu et al. (2019)
oligo-5Sr
Oligo-5SrDNA
oligo-6H-2-100
oligo-6VS-1
oligo-6VS-18
oligo-6VS-35
oligo-6VS-44
oligo-6VS-56
oligo-6VS-57
oligo-6VS-73
oligo-713 by Tang et al. (2016)
Oligo-744
oligo-7E-430
Oligo-7E-599
Oligo-7E-716
Oligo-7E-744
oligo-7E-744
Oligo-7v108
oligo-AAG
oligo-AC
oligo-ACG
oligo-ACT
Oligo-Ae334
oligo-Afa family
oligo-Afa family primers by Nagaki et al. (1995)
oligo-AG
oligo-AGG
Oligo-B11
oligo-B11
oligo-CAG
oligo-CAT
Oligo-D
oligo-D
Oligo-D probe
Oligo-D01-135
Oligo-Dv86
oligo-GAA
Oligo-HvCSR
Oligo-k288 by Yu et al., 2021
oligo-k566
oligo-k566 by Tang et al. (2014)
oligo-Ku
Oligo-P05
oligo-pAc1
oligo-pAc10
oligo-pAc11
oligo-pAc12
oligo-pAc2
oligo-pAc3
oligo-pAc4
oligo-pAc5
oligo-pAc6
oligo-pAc7
oligo-pAc8
oligo-pAc9
Oligo-pAs1
oligo-pAs1 by Tang et al. (2014)
oligo-pAs1-1
Oligo-pAs1-1 + Oligo-pAs1-3 + Oligo-pAs1-4 + Oligo-pAs1-6 + Oligo-AFA-3 + Oligo-AFA-4 oligos by Du et al. (2017)
oligo-pAs1-1 by Tang et al. (2014)
oligo-pAs1-1+oligo-pAs1-2 by Tang et al. (2014)
oligo-pAs1-1,4,6
Oligo-pAs1-2,5
Oligo-pDb12H
oligo-pDb12H
oligo-pHv62-1
Oligo-pSc119.2
oligo-pSc119.2
Oligo-pSc119.2 by Tang et al. (2014)
oligo-pSc119.2 by Tang et al. (2014)
oligo-pSc119.2-1
Oligo-pSc119.2-1
Oligo-pSc119.2-1 + Oligo-pSc119.2-2 by Tang et al. (2014)
oligo-pSc119.2-1 by Tang et al. (2014)
Oligo-pSc119.2-1 + Oligo-AFA-1,2
oligo-pSc119.2–1
Oligo-pSc119.2–1
Oligo-pSc119.2–1 + (GAA)10 oligos by Du et al. (2017)
oligo-pSc119.2–1+oligo-pSc119.2–2
oligo-pSc119.2–1+oligo-pSc119.2–2 by Tang et al. (2014)
Oligo-pSc200
Oligo-pSt122
oligo-pSt122
Oligo-pTa535
oligo-pTa535
Oligo-pTa535 by Tang et al. (2014)
oligo-pTa535 by Tang et al. (2014)
oligo-pTa535-1
Oligo-pTa535-1
oligo-pta535-1
oligo-pTa535-1 by Tang et al. (2014)
Oligo-pTa71
oligo-pTa71 by Tang et al. (2014)
Oligo-pTa71-2
Oligo-pTa71-2 by Tang et al. (2014)
oligo-pTa71-2 by Tang et al. (2014)
oligo-pTa713
Oligo-pTa71A-2
oligo-pTa794
oligo-pThp3.93
oligo-pThp80.1-1
oligo-Td25
oligo-Td9
Oligo-v03-86
OPF031296
P132
P170
P332
p380
P427
P720
pAc05
pAcCR1
pAcP43
pAcpCR1
pAcpCR2
pAcPR1
pAcPR10
pAcPR2
pAcPR3
pAcPR4
pAcPR5
pAcPR7
pAcPR9
pAcTR1
pAcTR2
pAcTRT1
pAesp_SAT86
pAs1
pAs1 oligo by Danilova et al. (2012)
pAs1 oligo by Du et al. (2017)
pAs1-1
pAs1-1 by Tang et el. (2014)
pAs1-1+pAs1-2
pAs1-1+pAs1-2 oligos by Danilova et al. (2012)
pAs1-1+pAs1-3+pAs1-4+pAs1-6+AFA-3+AFA-4 oligos by Du et al. (2017)
pAs1-1+pAs1-3+pAs1-4+pAs1-6+AFA-3+AFA-4+pSc119.2-1 oligos by Du et al. (2017)
pAs1-1+pAs1-3+pAs1-4+pAs1-6+AFA-3+AFA-4+pSc119.2-1+5S-1*+5S-2* oligos by Du et al. (2017) and Chen et al. (2019)*
pAs1-1+pAs1-5 oligos by Du et al. (2017)
pAs1-1, pAs1-3, pAs1-4, pAs1-6, AFA-3, AFA-4, pSc119.2–1
pAs1-3+pAs1-4+pAs1-6+(GAA)10+DP4J27982 oligos by Du et al. (2017)
pAs1-4 oligo by Du et al. (2017)
pAs1-4+(AAC)6 oligos by Du et al. (2017)
pAs1.1+pAs1.2 by Rayburn and Gill (1986)
pAx07
pAx11
pCbTaq4.14
pDb12H
pDbC2
pDbKB45
pDbKB49
pDvAfa
pDvTU383
pEt2
pHv62
pHvG39
pLe2
pMD232-500
pP1Taq2.5
primers by Fukui et al. (1994)
primers by Nagaki et al. (1995)
pSc119.2
pSc119.2-1 + (GAA)10
pSc119.2-1+(GAA)10 oligos by Du et al. (2017)
pSc119.2-1+pAs1-1+pAs 1-4+pAs 1-6 oligos by Du et al. (2017)
pSc119.2oligo by Du et al. (2017)
pSc200
pSc200 by Fu et al. (2015)
pSc250
pSc74
pTa100
pTa535
pTa535 by Tang et el. (2014)
pTa71
pTa71 by Tang et al. (2014)
pTa713 by Komuro et al. (2013)
pTa71A-2 by Xiao et al. (2017)
pTa794
pTe (Danilova et al., unpublished)
pThp12.19
pThp2.31
pThp2.77
pThp2.83
pThp3.81
pThp3.93
pThp3.96
pThp5.121
pThp5.84
pThp80.1
pWrrn
Quinta
RcAfa
S13
S158
S159
S161
S166
S17
S170
S175
S21
S23
S5
St2-80
STlib_117
STlib_96
STlib_98
StY_107
StY_34
StY_90
StY_93
Synt 2C
Synt 3
Synt 6
Synt 7
Synt1
Synt1-Synt7 by Li et al. (2020)
Synt2
Synt5
Synt6
Synt7
Th. ponticum-specific repetitive sequence oligonucleotides
Species
*
Aegilops biuncialis
Aegilops geniculata
Aegilops tauschii
Agropyron cristatum
Agropyron cristatum 4x
Agropyron desertorum
Agropyron fragile
Agropyron glael
Agropyron michnoi
Agropyron mongolicum
Dasypyrum breviaristatum
Dasypyrum breviaristatum 2x
Dasypyrum villosum
Elymus alashanicus
Elymus alaskanus
Elymus atratus
Elymus barystachyus
Elymus caninus
Elymus dahuricus
Elymus excelsus
Elymus hispanicus
Elymus longearistatus
Elymus nevskii
Elymus nutans
Elymus rectisetus
Elymus repens
Elymus scabrifolius
Elymus sibiricus
Elymus trachycaulus
Elymus xiningensis
Kengyilia grandiglumis
Kengyilia hirsuta
Kengyilia kokonorica
Kengyilia rigidula
Kengyilia thoroldiana
Leymus mollis (Elymus mollis)
Psathyrostachys huashanica
Psathyrostachys juncea
Pseudoroegneria libanotica
Pseudoroegneria marginata
Pseudoroegneria spicata
Pseudoroegneria stipifolia
Pseudoroegneria stipifolia 4x
Pseudoroegneria strigosa 4x
Pseudoroegneria tauri
Pseudorogneria libanotica
Roegneria breviglumis
Roegneria ciliaris
Roegneria grandis
Roegneria pendulina
Roegneria sinica
Roegneria sinica var. media
Roegneria stricta
Roegneria turczaninovii
Thinopyrum bessarabicum
Thinopyrum caespitosum
Thinopyrum elongatum
Thinopyrum elongatum 4x
Thinopyrum elongatun
Thinopyrum intermedium
Thinopyrum intermedium ssp. trichophorum
Thinopyrum ponticum
Thinopyrum scirpeum 4x
Triticum aestivum × Thinopyrum
Tritipyrum (Thinopyrum elongatum)
Trititrigia
wheat-Roegneria ciliaris
Year
*
1987
1988
1990
1991
1993
1994
1995
1996
1997
1999
2001
2003
2005
2006
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
Class
Probe
Species
Year
Article
Sequence